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LOC107622455 probable xyloglucan 6-xylosyltransferase 3 [ Arachis ipaensis ]

Gene ID: 107622455, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107622455
Gene description
probable xyloglucan 6-xylosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107622455 in Genome Data Viewer
Location:
chromosome: B10
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B10 NC_029794.2 (909817..911768)
100 previous assembly Araip1.0 (GCF_000816755.1) B10 NC_029794.1 (909841..911805)

Chromosome B10 - NC_029794.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g61400 Neighboring gene vesicle transport v-SNARE 11-like Neighboring gene putative phospholipid-transporting ATPase 9 Neighboring gene uncharacterized LOC107622154

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029794.2 Reference Araip1.1

    Range
    909817..911768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016324349.2 → XP_016179835.1  probable xyloglucan 6-xylosyltransferase 3

    Conserved Domains (1) summary
    PLN03182
    Location:29 → 443
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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