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LOC107621514 galacturonosyltransferase 8 [ Arachis ipaensis ]

Gene ID: 107621514, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107621514
Gene description
galacturonosyltransferase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107621514 in Genome Data Viewer
Location:
chromosome: B10
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B10 NC_029794.2 (117271714..117275621, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B10 NC_029794.1 (118461639..118465541)

Chromosome B10 - NC_029794.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110267391 Neighboring gene uncharacterized LOC107621515 Neighboring gene pentatricopeptide repeat-containing protein At2g15690-like Neighboring gene putative pentatricopeptide repeat-containing protein At1g53330 Neighboring gene uncharacterized LOC107621094

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galacturonosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029794.2 Reference Araip1.1

    Range
    117271714..117275621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016323541.2 → XP_016179027.1  galacturonosyltransferase 8 isoform X1

    Conserved Domains (1) summary
    PLN02523
    Location:4 → 556
    PLN02523; galacturonosyltransferase

  2. XM_021112856.1 → XP_020968515.1  galacturonosyltransferase 8 isoform X3

    Conserved Domains (1) summary
    PLN02523
    Location:1 → 463
    PLN02523; galacturonosyltransferase

  3. XM_021112854.1 → XP_020968513.1  galacturonosyltransferase 8 isoform X1

    Conserved Domains (1) summary
    PLN02523
    Location:4 → 556
    PLN02523; galacturonosyltransferase

  4. XM_021112855.1 → XP_020968514.1  galacturonosyltransferase 8 isoform X2

    Conserved Domains (1) summary
    cl28622
    Location:4 → 465
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
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