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LOC107617394 callose synthase 9 [ Arachis ipaensis ]

Gene ID: 107617394, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107617394
Gene description
callose synthase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107617394 in Genome Data Viewer
Location:
chromosome: B09
Exon count:
53
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B09 NC_029793.2 (140389077..140421401, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B09 NC_029793.1 (136542667..136574970)

Chromosome B09 - NC_029793.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107616842 Neighboring gene uncharacterized LOC107616260 Neighboring gene callose synthase 3 Neighboring gene uncharacterized LOC107616259

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029793.2 Reference Araip1.1

    Range
    140389077..140421401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016319150.2 → XP_016174636.1  callose synthase 9 isoform X1

    Conserved Domains (3) summary
    COG4956
    Location:1751 → 1890
    COG4956; Uncharacterized conserved protein YacL, contains PIN and TRAM domains [General function prediction only]
    pfam02364
    Location:1026 → 1765
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_021110875.1 → XP_020966534.1  callose synthase 9 isoform X1

    Conserved Domains (3) summary
    COG4956
    Location:1751 → 1890
    COG4956; Uncharacterized conserved protein YacL, contains PIN and TRAM domains [General function prediction only]
    pfam02364
    Location:1026 → 1765
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  3. XM_016319152.2 → XP_016174638.1  callose synthase 9 isoform X1

    Conserved Domains (3) summary
    COG4956
    Location:1751 → 1890
    COG4956; Uncharacterized conserved protein YacL, contains PIN and TRAM domains [General function prediction only]
    pfam02364
    Location:1026 → 1765
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  4. XM_021110876.1 → XP_020966535.1  callose synthase 9 isoform X2

    Conserved Domains (2) summary
    pfam02364
    Location:1026 → 1483
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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