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LOC107612482 senescence-associated carboxylesterase 101 [ Arachis ipaensis ]

Gene ID: 107612482, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107612482
Gene description
senescence-associated carboxylesterase 101
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107612482 in Genome Data Viewer
Location:
chromosome: B08
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B08 NC_029792.2 (119812662..119815324)
100 previous assembly Araip1.0 (GCF_000816755.1) B08 NC_029792.1 (117821015..117823673, complement)

Chromosome B08 - NC_029792.2Genomic Context describing neighboring genes Neighboring gene protein FRA10AC1 Neighboring gene cellulose synthase A catalytic subunit 3 [UDP-forming] Neighboring gene phosphoribosylamine--glycine ligase, chloroplastic-like Neighboring gene uncharacterized LOC107611524

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carboxylic ester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
senescence-associated carboxylesterase 101

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029792.2 Reference Araip1.1

    Range
    119812662..119815324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016314172.2 → XP_016169658.1  senescence-associated carboxylesterase 101 isoform X1

    Conserved Domains (2) summary
    pfam18117
    Location:346 → 570
    EDS1_EP; Enhanced disease susceptibility 1 protein EP domain
    cl21494
    Location:100 → 200
    Abhydrolase; alpha/beta hydrolases

  2. XM_016314173.2 → XP_016169659.1  senescence-associated carboxylesterase 101 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:100 → 200
    Abhydrolase; alpha/beta hydrolases

  3. XM_016314174.2 → XP_016169660.1  senescence-associated carboxylesterase 101 isoform X3

    Conserved Domains (2) summary
    pfam18117
    Location:344 → 568
    EDS1_EP; Enhanced disease susceptibility 1 protein EP domain
    cl21494
    Location:100 → 198
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

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