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LOC107612481 cellulose synthase A catalytic subunit 3 [UDP-forming] [ Arachis ipaensis ]

Gene ID: 107612481, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107612481
Gene description
cellulose synthase A catalytic subunit 3 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107612481 in Genome Data Viewer
Location:
chromosome: B08
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B08 NC_029792.2 (119790943..119802809)
100 previous assembly Araip1.0 (GCF_000816755.1) B08 NC_029792.1 (117833530..117845410, complement)

Chromosome B08 - NC_029792.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At5g64816 Neighboring gene protein FRA10AC1 Neighboring gene senescence-associated carboxylesterase 101 Neighboring gene phosphoribosylamine--glycine ligase, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 3 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029792.2 Reference Araip1.1

    Range
    119790943..119802809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021109872.1 → XP_020965531.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  2. XM_021109873.1 → XP_020965532.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  3. XM_016314170.2 → XP_016169656.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  4. XM_021109870.1 → XP_020965529.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  5. XM_021109871.1 → XP_020965530.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  6. XM_021109877.1 → XP_020965536.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  7. XM_021109878.1 → XP_020965537.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  8. XM_021109874.1 → XP_020965533.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  9. XM_021109875.1 → XP_020965534.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  10. XM_021109876.1 → XP_020965535.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1066
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit
Nucleotide Protein
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