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LOC107609313 alpha-1,3/1,6-mannosyltransferase ALG2 [ Arachis ipaensis ]

Gene ID: 107609313, updated on 18-Sep-2024

Summary

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Gene symbol
LOC107609313
Gene description
alpha-1,3/1,6-mannosyltransferase ALG2
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107609313 in Genome Data Viewer
Location:
chromosome: B07
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B07 NC_029791.2 (17138874..17143200, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B07 NC_029791.1 (17069560..17073897, complement)

Chromosome B07 - NC_029791.2Genomic Context describing neighboring genes Neighboring gene arginine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene premnaspirodiene oxygenase-like Neighboring gene uncharacterized LOC110264492 Neighboring gene uncharacterized LOC110264493

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alpha-1,3-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3/1,6-mannosyltransferase ALG2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029791.2 Reference Araip1.1

    Range
    17138874..17143200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016311224.2 → XP_016166710.1  alpha-1,3/1,6-mannosyltransferase ALG2

    Conserved Domains (1) summary
    cd03805
    Location:10 → 385
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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