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LOC107608969 conserved oligomeric Golgi complex subunit 5 [ Arachis ipaensis ]

Gene ID: 107608969, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107608969
Gene description
conserved oligomeric Golgi complex subunit 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC107608969 in Genome Data Viewer
Location:
chromosome: B07
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B07 NC_029791.2 (3896617..3900766)
100 previous assembly Araip1.0 (GCF_000816755.1) B07 NC_029791.1 (3398810..3402876, complement)

Chromosome B07 - NC_029791.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107608169 Neighboring gene ELL-associated factor 2 Neighboring gene F-box protein At1g47340-like Neighboring gene uncharacterized LOC107609001

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029791.2 Reference Araip1.1

    Range
    3896617..3900766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016310770.2 → XP_016166256.2  conserved oligomeric Golgi complex subunit 5

    Conserved Domains (1) summary
    cl22951
    Location:44 → 142
    Vps51; Vps51/Vps67
Nucleotide Protein
Heading Accession and Version

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