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LOC107605955 hydroxyproline O-galactosyltransferase HPGT1 [ Arachis ipaensis ]

Gene ID: 107605955, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107605955
Gene description
hydroxyproline O-galactosyltransferase HPGT1
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107605955 in Genome Data Viewer
Location:
chromosome: B07
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B07 NC_029791.2 (115541577..115544766, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B07 NC_029791.1 (115195081..115198251, complement)

Chromosome B07 - NC_029791.2Genomic Context describing neighboring genes Neighboring gene probable inactive receptor kinase At4g23740 Neighboring gene uncharacterized LOC107605951 Neighboring gene mitotic apparatus protein p62-like Neighboring gene transfer RNA phenylalanine (anticodon GAA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1
Names
probable beta-1,3-galactosyltransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029791.2 Reference Araip1.1

    Range
    115541577..115544766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016307909.2 → XP_016163395.1  hydroxyproline O-galactosyltransferase HPGT1

    Conserved Domains (2) summary
    PLN03193
    Location:78 → 337
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:16 → 93
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
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