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LOC107605386 hydroxyproline O-arabinosyltransferase 1 [ Arachis ipaensis ]

Gene ID: 107605386, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107605386
Gene description
hydroxyproline O-arabinosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107605386 in Genome Data Viewer
Location:
chromosome: B06
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B06 NC_029790.2 (131096498..131101351, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B06 NC_029790.1 (130670815..130675647, complement)

Chromosome B06 - NC_029790.2Genomic Context describing neighboring genes Neighboring gene calcium uptake protein, mitochondrial Neighboring gene FAD-linked sulfhydryl oxidase ERV1 Neighboring gene uncharacterized LOC107605381 Neighboring gene uncharacterized LOC107647653 Neighboring gene homeobox protein knotted-1-like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029790.2 Reference Araip1.1

    Range
    131096498..131101351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016307263.2 → XP_016162749.1  hydroxyproline O-arabinosyltransferase 1 isoform X1

  2. XM_016307264.2 → XP_016162750.1  hydroxyproline O-arabinosyltransferase 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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