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hs6st1a heparan sulfate 6-O-sulfotransferase 1a [ Sinocyclocheilus grahami ]

Gene ID: 107602601, updated on 14-Mar-2024

Summary

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Gene symbol
hs6st1a
Gene description
heparan sulfate 6-O-sulfotransferase 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus grahami
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
Orthologs
zebrafish all
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Genomic context

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See hs6st1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current SAMN03320097.WGS_v1.1 (GCF_001515645.1) Unplaced Scaffold NW_015505510.1 (60054..215930, complement)

NW_015505510.1Genomic Context describing neighboring genes Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1 Neighboring gene uncharacterized LOC107602610 Neighboring gene otolith matrix protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015505510.1 Unplaced Scaffold Reference SAMN03320097.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus grahami Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320097.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015505510.1 Reference SAMN03320097.WGS_v1.1 Primary Assembly

    Range
    60054..215930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016295143.1 → XP_016150629.1  heparan-sulfate 6-O-sulfotransferase 1-A

    UniProtKB/TrEMBL
    A0A672NQ23
Nucleotide Protein
Heading Accession and Version

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