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si:ch211-236h17.3 carbohydrate sulfotransferase 11-like [ Sinocyclocheilus grahami ]

Gene ID: 107593992, updated on 14-Mar-2024

Summary

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Gene symbol
si:ch211-236h17.3
Gene description
carbohydrate sulfotransferase 11-like
See related
Ensembl:ENSSGRG00000018763
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus grahami
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
Orthologs
zebrafish all
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Genomic context

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See si:ch211-236h17.3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current SAMN03320097.WGS_v1.1 (GCF_001515645.1) Unplaced Scaffold NW_015505357.1 (1187414..1203129, complement)

NW_015505357.1Genomic Context describing neighboring genes Neighboring gene Krueppel-like factor 15 Neighboring gene solute carrier family 41 member 1-like Neighboring gene uncharacterized LOC107593993 Neighboring gene uncharacterized LOC107593994

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015505357.1 Unplaced Scaffold Reference SAMN03320097.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus grahami Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320097.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015505357.1 Reference SAMN03320097.WGS_v1.1 Primary Assembly

    Range
    1187414..1203129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016283921.1 → XP_016139407.1  carbohydrate sulfotransferase 11-like

    UniProtKB/TrEMBL
    A0A672MAH2
    Related
    ENSSGRP00000033714.1, ENSSGRT00000036193.1
Nucleotide Protein
Heading Accession and Version

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