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LOC107593177 heparan sulfate 2-O-sulfotransferase 1-like [ Sinocyclocheilus grahami ]

Gene ID: 107593177, updated on 9-Nov-2023

Summary

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Gene symbol
LOC107593177
Gene description
heparan sulfate 2-O-sulfotransferase 1-like
See related
Ensembl:ENSSGRG00000048440
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus grahami
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
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Genomic context

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See LOC107593177 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current SAMN03320097.WGS_v1.1 (GCF_001515645.1) Unplaced Scaffold NW_015505345.1 (469219..534202, complement)

NW_015505345.1Genomic Context describing neighboring genes Neighboring gene LIM domain transcription factor LMO4.2-like Neighboring gene LIM domain transcription factor LMO4-like Neighboring gene zinc finger protein DZIP1L-like Neighboring gene transcription factor Sox-14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015505345.1 Unplaced Scaffold Reference SAMN03320097.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus grahami Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320097.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015505345.1 Reference SAMN03320097.WGS_v1.1 Primary Assembly

    Range
    469219..534202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016282792.1 → XP_016138278.1  heparan sulfate 2-O-sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A672S7G2
    Related
    ENSSGRP00000097038.1, ENSSGRT00000103237.1
Nucleotide Protein
Heading Accession and Version

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