U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107592340 VIP36-like protein [ Sinocyclocheilus grahami ]

Gene ID: 107592340, updated on 19-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107592340
Gene description
VIP36-like protein
See related
Ensembl:ENSSGRG00000046675
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus grahami
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107592340 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current SAMN03320097.WGS_v1.1 (GCF_001515645.1) Unplaced Scaffold NW_015505331.1 (2560519..2564747, complement)

NW_015505331.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase A-Raf-like Neighboring gene uncharacterized LOC107592344 Neighboring gene leukocyte surface antigen CD53-like Neighboring gene T-box transcription factor TBX3-like Neighboring gene TM2 domain containing 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015505331.1 Unplaced Scaffold Reference SAMN03320097.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sinocyclocheilus grahami Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320097.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015505331.1 Reference SAMN03320097.WGS_v1.1 Primary Assembly

    Range
    2560519..2564747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016281843.1 → XP_016137329.1  VIP36-like protein

    UniProtKB/TrEMBL
    A0A672RVS6, A0A672RVT9
    Related
    ENSSGRP00000093226.1, ENSSGRT00000099211.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases