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SDC4 syndecan 4 [ Rousettus aegyptiacus (Egyptian rousette) ]

Gene ID: 107514561, updated on 30-Mar-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
Locus tag
HJG63_017282
Gene type
protein coding
RefSeq status
MODEL
Organism
Rousettus aegyptiacus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416287.1 (10835919..10854926)
100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015494557.1 (498709..517695)

NW_023416287.1Genomic Context describing neighboring genes Neighboring gene dysbindin domain containing 2 Neighboring gene SYS1 golgi trafficking protein Neighboring gene TP53 target 5 Neighboring gene uncharacterized LOC118609985 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene matrilin 4 Neighboring gene secretory leukocyte peptidase inhibitor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRouAeg1.p

Genomic

  1. NW_023416287.1 Reference mRouAeg1.p

    Range
    10835919..10854926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016152396.2 → XP_016007882.2  syndecan-4

    UniProtKB/TrEMBL
    A0A7J8DKF9, A0A7J8DL27
    Conserved Domains (1) summary
    pfam01034
    Location:143 → 200
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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