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LOC107495368 hydroxyproline O-galactosyltransferase HPGT3 [ Arachis duranensis ]

Gene ID: 107495368, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107495368
Gene description
hydroxyproline O-galactosyltransferase HPGT3
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC107495368 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 6 NC_029777.3 (104967334..104972337)
101 previous assembly Aradu1.1 (GCF_000817695.2) A06 NC_029777.2 (106255005..106259742)

Chromosome 6 - NC_029777.3Genomic Context describing neighboring genes Neighboring gene probable glycosyltransferase At5g25310 Neighboring gene thiamine-repressible mitochondrial transport protein THI74 Neighboring gene subtilisin-like protease SBT4.8 Neighboring gene pectinesterase inhibitor 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. Nagy ED, et al. BMC Genomics, 2012 Sep 11. PMID 22967170, Free PMC Article
  2. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT3
Names
probable beta-1,3-galactosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029777.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    104967334..104972337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021125403.2 → XP_020981062.1  hydroxyproline O-galactosyltransferase HPGT3

    UniProtKB/TrEMBL
    A0A6P5M7D0
    Conserved Domains (1) summary
    PLN03193
    Location:6 → 335
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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