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LOC107493365 beta-1,4-xylosyltransferase IRX9 [ Arachis duranensis ]

Gene ID: 107493365, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107493365
Gene description
beta-1,4-xylosyltransferase IRX9
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107493365 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 6 NC_029777.3 (21406608..21409146)
101 previous assembly Aradu1.1 (GCF_000817695.2) A06 NC_029777.2 (21569307..21572011)

Chromosome 6 - NC_029777.3Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase L3 Neighboring gene DEAD-box ATP-dependent RNA helicase 57 Neighboring gene uncharacterized LOC107493375 Neighboring gene uncharacterized LOC107493360

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-xylosyltransferase IRX9
Names
probable beta-1,4-xylosyltransferase IRX9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029777.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    21406608..21409146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016114463.3 → XP_015969949.1  beta-1,4-xylosyltransferase IRX9

    UniProtKB/TrEMBL
    A0A6P4DKT5
    Conserved Domains (1) summary
    cl11394
    Location:1 → 330
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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