U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107491613 cellulose synthase A catalytic subunit 2 [UDP-forming] [ Arachis duranensis ]

Gene ID: 107491613, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC107491613
Gene description
cellulose synthase A catalytic subunit 2 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107491613 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 5 NC_029776.3 (106348817..106355462)
101 previous assembly Aradu1.1 (GCF_000817695.2) A05 NC_029776.2 (108333359..108339700)

Chromosome 5 - NC_029776.3Genomic Context describing neighboring genes Neighboring gene abscisic stress-ripening protein 2 Neighboring gene abscisic stress-ripening protein 2 Neighboring gene chlorophyll a-b binding protein of LHCII type 1 Neighboring gene uncharacterized LOC107491464

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cellulose synthase A catalytic subunit 2 [UDP-forming]

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029776.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    106348817..106355462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016112496.3 → XP_015967982.1  cellulose synthase A catalytic subunit 2 [UDP-forming]

    UniProtKB/TrEMBL
    A0A6P4DGK4
    Conserved Domains (3) summary
    PLN02436
    Location:1 → 1085
    PLN02436; cellulose synthase A
    pfam14569
    Location:34 → 97
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:527 → 836
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases