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LOC107491416 xyloglucan glycosyltransferase 4 [ Arachis duranensis ]

Gene ID: 107491416, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107491416
Gene description
xyloglucan glycosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107491416 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 5 NC_029776.3 (98703061..98706129)
101 previous assembly Aradu1.1 (GCF_000817695.2) A05 NC_029776.2 (100651039..100654194)

Chromosome 5 - NC_029776.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127747724 Neighboring gene uncharacterized LOC107490979 Neighboring gene uncharacterized LOC107491414 Neighboring gene uncharacterized LOC107491413

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan glycosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029776.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    98703061..98706129
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016112265.3 → XP_015967751.1  xyloglucan glycosyltransferase 4

    UniProtKB/TrEMBL
    A0A6P4DL84
    Conserved Domains (2) summary
    pfam13641
    Location:200 → 432
    Glyco_tranf_2_3; Glycosyltransferase like family 2
    cl11394
    Location:200 → 436
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases