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LOC107488763 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Arachis duranensis ]

Gene ID: 107488763, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107488763
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107488763 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 5 NC_029776.3 (24809470..24814174)
101 previous assembly Aradu1.1 (GCF_000817695.2) A05 NC_029776.2 (25197305..25202065)

Chromosome 5 - NC_029776.3Genomic Context describing neighboring genes Neighboring gene protein FAR-RED IMPAIRED RESPONSE 1-like Neighboring gene uncharacterized LOC107488689 Neighboring gene uncharacterized LOC107488864 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029776.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    24809470..24814174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016109525.3 → XP_015965011.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A6P4DAI0
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 843
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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