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LOC107487729 beta-1,4-xylosyltransferase IRX14-like [ Arachis duranensis ]

Gene ID: 107487729, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107487729
Gene description
beta-1,4-xylosyltransferase IRX14-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107487729 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 5 NC_029776.3 (7256928..7260657, complement)
101 previous assembly Aradu1.1 (GCF_000817695.2) A05 NC_029776.2 (7280271..7284008, complement)

Chromosome 5 - NC_029776.3Genomic Context describing neighboring genes Neighboring gene UPF0481 protein At3g47200-like Neighboring gene SKP1-like protein 1A Neighboring gene uncharacterized LOC107487728 Neighboring gene soyasapogenol B glucuronide galactosyltransferase Neighboring gene soyasapogenol B glucuronide galactosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: beta-1,4-xylosyltransferase IRX14-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029776.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    7256928..7260657 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016108425.3 → XP_015963911.2  LOW QUALITY PROTEIN: beta-1,4-xylosyltransferase IRX14-like

    UniProtKB/TrEMBL
    A0A6P4D894
    Conserved Domains (1) summary
    cl11394
    Location:135 → 395
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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