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LOC107487354 arabinosyltransferase XEG113 [ Arachis duranensis ]

Gene ID: 107487354, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107487354
Gene description
arabinosyltransferase XEG113
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107487354 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 5 NC_029776.3 (2868242..2873512)
101 previous assembly Aradu1.1 (GCF_000817695.2) A05 NC_029776.2 (2858438..2863729)

Chromosome 5 - NC_029776.3Genomic Context describing neighboring genes Neighboring gene calvin cycle protein CP12-1, chloroplastic Neighboring gene abscisic acid 8'-hydroxylase CYP707A2 Neighboring gene pentatricopeptide repeat-containing protein At4g19220, mitochondrial Neighboring gene F-box/kelch-repeat protein At3g23880

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arabinosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall pectin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinosyltransferase XEG113

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029776.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    2868242..2873512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016107967.3 → XP_015963453.1  arabinosyltransferase XEG113

    UniProtKB/TrEMBL
    A0A6P4D765
    Conserved Domains (1) summary
    pfam03407
    Location:161 → 387
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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