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LOC107485422 probable galacturonosyltransferase 7 [ Arachis duranensis ]

Gene ID: 107485422, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107485422
Gene description
probable galacturonosyltransferase 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107485422 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 4 NC_029775.3 (103963130..103970053, complement)
101 previous assembly Aradu1.1 (GCF_000817695.2) A04 NC_029775.2 (105396497..105403582, complement)

Chromosome 4 - NC_029775.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110280175 Neighboring gene protein SCARECROW Neighboring gene probable protein S-acyltransferase 14 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029775.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    103963130..103970053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016105956.3 → XP_015961442.1  probable galacturonosyltransferase 7

    UniProtKB/TrEMBL
    A0A6P4D618
    Conserved Domains (2) summary
    PLN02769
    Location:1 → 596
    PLN02769; Probable galacturonosyltransferase
    cl11394
    Location:306 → 580
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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