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LOC107482396 probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [ Arachis duranensis ]

Gene ID: 107482396, updated on 18-Sep-2024

Summary

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Gene symbol
LOC107482396
Gene description
probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107482396 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 4 NC_029775.3 (1763515..1768239)
101 previous assembly Aradu1.1 (GCF_000817695.2) A04 NC_029775.2 (1789096..1793899)

Chromosome 4 - NC_029775.3Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g14190, chloroplastic Neighboring gene uncharacterized LOC107482397 Neighboring gene xyloglucan endotransglucosylase/hydrolase 2 Neighboring gene receptor-like kinase TMK4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029775.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    1763515..1768239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016102860.3 → XP_015958346.1  probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase

    UniProtKB/TrEMBL
    A0A6P4CXZ9
    Conserved Domains (1) summary
    pfam03155
    Location:28 → 519
    Alg6_Alg8; ALG6, ALG8 glycosyltransferase family

  2. XM_016102859.3 → XP_015958345.1  probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase

    UniProtKB/TrEMBL
    A0A6P4CXZ9
    Conserved Domains (1) summary
    pfam03155
    Location:28 → 519
    Alg6_Alg8; ALG6, ALG8 glycosyltransferase family
Nucleotide Protein
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