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LOC107480262 callose synthase 5 [ Arachis duranensis ]

Gene ID: 107480262, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107480262
Gene description
callose synthase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107480262 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
42
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 3 NC_029774.3 (112754809..112786306)
101 previous assembly Aradu1.1 (GCF_000817695.2) A03 NC_029774.2 (111417840..111449990)

Chromosome 3 - NC_029774.3Genomic Context describing neighboring genes Neighboring gene phytochrome A-like Neighboring gene probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC107480256

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. Nagy ED, et al. BMC Genomics, 2012 Sep 11. PMID 22967170, Free PMC Article
  2. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029774.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    112754809..112786306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016100401.3 → XP_015955887.1  callose synthase 5

    UniProtKB/TrEMBL
    A0A6P4CX39
    Conserved Domains (3) summary
    pfam02364
    Location:1035 → 1778
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:47 → 154
    Vta1; Vta1 like
    pfam14288
    Location:323 → 435
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases