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LOC107473063 granule-bound starch synthase 1, chloroplastic/amyloplastic [ Arachis duranensis ]

Gene ID: 107473063, updated on 18-Sep-2024

Summary

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Gene symbol
LOC107473063
Gene description
granule-bound starch synthase 1, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107473063 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 2 NC_029773.3 (5076193..5082567, complement)
101 previous assembly Aradu1.1 (GCF_000817695.2) A02 NC_029773.2 (4865538..4872068, complement)

Chromosome 2 - NC_029773.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107473100 Neighboring gene probable RNA-binding protein ARP1 Neighboring gene uncharacterized LOC107473064 Neighboring gene transfer RNA cysteine (anticodon GCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029773.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    5076193..5082567 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016092585.3 → XP_015948071.1  granule-bound starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A6P4CAV9
    Conserved Domains (2) summary
    cd03791
    Location:91 → 585
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:87 → 588
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
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