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LOC107468852 probable UDP-arabinopyranose mutase 2 [ Arachis duranensis ]

Gene ID: 107468852, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107468852
Gene description
probable UDP-arabinopyranose mutase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107468852 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 1 NC_029772.3 (103093429..103095153, complement)
101 previous assembly Aradu1.1 (GCF_000817695.2) A01 NC_029772.2 (104458756..104460420, complement)

Chromosome 1 - NC_029772.3Genomic Context describing neighboring genes Neighboring gene squamosa promoter-binding-like protein 6 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC110276732 Neighboring gene (+)-piperitol/(+)-sesamin synthase CYP81Q2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-arabinopyranose mutase 2
Names
alpha-1,4-glucan-protein synthase [UDP-forming] 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029772.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    103093429..103095153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016088228.3 → XP_015943714.1  probable UDP-arabinopyranose mutase 2

    UniProtKB/TrEMBL
    A0A6P4BKM0
    Conserved Domains (1) summary
    PLN03180
    Location:3 → 348
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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