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LOC107467648 callose synthase 9 [ Arachis duranensis ]

Gene ID: 107467648, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107467648
Gene description
callose synthase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107467648 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
53
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 9 NC_029780.3 (115342093..115369379)
101 previous assembly Aradu1.1 (GCF_000817695.2) A09 NC_029780.2 (116403334..116430618)

Chromosome 9 - NC_029780.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107467683 Neighboring gene callose synthase 3 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 8 Neighboring gene uncharacterized LOC127741625

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029780.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    115342093..115369379
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016086792.3 → XP_015942278.1  callose synthase 9

    UniProtKB/TrEMBL
    A0A6P4BS74
    Conserved Domains (2) summary
    pfam02364
    Location:1023 → 1762
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:339 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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