U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107465849 probable galacturonosyltransferase 4 [ Arachis duranensis ]

Gene ID: 107465849, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC107465849
Gene description
probable galacturonosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107465849 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 1 NC_029772.3 (98763653..98767899)
101 previous assembly Aradu1.1 (GCF_000817695.2) A01 NC_029772.2 (100109185..100113408)

Chromosome 1 - NC_029772.3Genomic Context describing neighboring genes Neighboring gene ATP-dependent 6-phosphofructokinase 2 Neighboring gene subtilisin-like protease SBT5.4 Neighboring gene myb family transcription factor PHL7 Neighboring gene uncharacterized LOC107465805

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029772.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    98763653..98767899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016084822.3 → XP_015940308.1  probable galacturonosyltransferase 4

    UniProtKB/TrEMBL
    A0A6P4BN17
    Conserved Domains (2) summary
    cd06429
    Location:339 → 633
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02829
    Location:7 → 646
    PLN02829; Probable galacturonosyltransferase

  2. XM_016084828.3 → XP_015940314.1  probable galacturonosyltransferase 4

    UniProtKB/TrEMBL
    A0A6P4BN17
    Conserved Domains (2) summary
    cd06429
    Location:339 → 633
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02829
    Location:7 → 646
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases