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LOC107465691 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Arachis duranensis ]

Gene ID: 107465691, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107465691
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107465691 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 9 NC_029780.3 (65303130..65312371)
101 previous assembly Aradu1.1 (GCF_000817695.2) A09 NC_029780.2 (56341363..56351708, complement)

Chromosome 9 - NC_029780.3Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC107465685 Neighboring gene probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029780.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    65303130..65312371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016084661.3 → XP_015940147.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X1

    UniProtKB/TrEMBL
    A0A6P4C1T3
    Conserved Domains (9) summary
    smart00028
    Location:292 → 320
    TPR; Tetratricopeptide repeats
    COG0457
    Location:98 → 384
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:246 → 849
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:153 → 181
    TPR; TPR repeat [structural motif]
    cd15832
    Location:321 → 352
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:153 → 186
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:17 → 82
    TPR_11; TPR repeat
    cl10013
    Location:488 → 848
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl24038
    Location:292 → 383
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  2. XM_052253942.1 → XP_052109902.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X2

    UniProtKB/TrEMBL
    A0A9C6TGI7
Nucleotide Protein
Heading Accession and Version

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