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LOC107461898 xylogalacturonan beta-1,3-xylosyltransferase [ Arachis duranensis ]

Gene ID: 107461898, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107461898
Gene description
xylogalacturonan beta-1,3-xylosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107461898 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 1 NC_029772.3 (92785261..92788108)
101 previous assembly Aradu1.1 (GCF_000817695.2) A01 NC_029772.2 (93880333..93883209)

Chromosome 1 - NC_029772.3Genomic Context describing neighboring genes Neighboring gene heptahelical transmembrane protein ADIPOR1 Neighboring gene formyltetrahydrofolate deformylase 1, mitochondrial Neighboring gene probable glycosyltransferase At5g20260 Neighboring gene receptor like protein 21-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. Nagy ED, et al. BMC Genomics, 2012 Sep 11. PMID 22967170, Free PMC Article
  2. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylogalacturonan beta-1,3-xylosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029772.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    92785261..92788108
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016080462.3 → XP_015935948.1  xylogalacturonan beta-1,3-xylosyltransferase

    UniProtKB/TrEMBL
    A0A6P4BVQ8
    Conserved Domains (1) summary
    pfam03016
    Location:125 → 412
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

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