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LOC107461891 probable glucuronoxylan glucuronosyltransferase IRX7 [ Arachis duranensis ]

Gene ID: 107461891, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107461891
Gene description
probable glucuronoxylan glucuronosyltransferase IRX7
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107461891 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) Unplaced Scaffold NW_026264853.1 (38401..41614, complement)
101 previous assembly Aradu1.1 (GCF_000817695.2) A08 NC_029779.2 (27126093..27129209, complement)

NW_026264853.1Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 31-like Neighboring gene uncharacterized LOC127744199 Neighboring gene SHUGOSHIN 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucuronoxylan glucuronosyltransferase IRX7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NW_026264853.1 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    38401..41614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021129203.2 → XP_020984862.1  probable glucuronoxylan glucuronosyltransferase IRX7 isoform X2

    UniProtKB/TrEMBL
    A0A6P5MI28
    Conserved Domains (1) summary
    pfam03016
    Location:87 → 389
    Exostosin; Exostosin family

  2. XM_016080452.3 → XP_015935938.1  probable glucuronoxylan glucuronosyltransferase IRX7 isoform X1

    UniProtKB/TrEMBL
    A0A6P4BDD9
    Conserved Domains (1) summary
    pfam03016
    Location:111 → 413
    Exostosin; Exostosin family
Nucleotide Protein
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