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LOC107459705 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [ Arachis duranensis ]

Gene ID: 107459705, updated on 23-Nov-2023

Summary

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Gene symbol
LOC107459705
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis duranensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107459705 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 7 NC_029778.3 (73719346..73744745, complement)
101 previous assembly Aradu1.1 (GCF_000817695.2) A07 NC_029778.2 (75551619..75577295)

Chromosome 7 - NC_029778.3Genomic Context describing neighboring genes Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 Neighboring gene uncharacterized LOC107459665 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC127740574

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aradu.V14167.gnm2.J7QH Primary Assembly

Genomic

  1. NC_029778.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Range
    73719346..73744745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052251475.1 → XP_052107435.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X2

    UniProtKB/TrEMBL
    A0A9C6WJX7

  2. XM_016077930.3 → XP_015933416.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P4AYU5
    Conserved Domains (1) summary
    PLN03064
    Location:10 → 920
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  3. XM_016077933.3 → XP_015933419.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P4AYU5
    Conserved Domains (1) summary
    PLN03064
    Location:10 → 920
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  4. XM_016077931.3 → XP_015933417.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P4AYU5
    Conserved Domains (1) summary
    PLN03064
    Location:10 → 920
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  5. XM_016077932.3 → XP_015933418.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P4AYU5
    Conserved Domains (1) summary
    PLN03064
    Location:10 → 920
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  6. XM_021128284.2 → XP_020983943.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P4AYU5
    Conserved Domains (1) summary
    PLN03064
    Location:10 → 920
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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