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LOC107451464 transcription factor HES-4-A-like [ Parasteatoda tepidariorum (common house spider) ]

Gene ID: 107451464, updated on 7-Dec-2023

Summary

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Gene symbol
LOC107451464
Gene description
transcription factor HES-4-A-like
See related
EnsemblRapid:LOC107451464
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Parasteatoda tepidariorum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Araneoidea; Theridiidae; Parasteatoda
Also known as
hairy
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Genomic context

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See LOC107451464 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ptep_3.0 (GCF_000365465.3) Unplaced Scaffold NW_024970103.1 (528261..530087)
100 previous assembly Ptep_1.0 (GCF_000365465.1) Unplaced Scaffold NW_015484299.1 (463153..465188, complement)

NW_024970103.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transfer RNA aspartic acid (anticodon GUC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of the impact of RNA preservation methods of spiders for de novo transcriptome assembly. Kono N, et al. Mol Ecol Resour, 2016 May. PMID 26561354
  2. Evolutionary origin of type IV classical cadherins in arthropods. Sasaki M, et al. BMC Evol Biol, 2017 Jun 17. PMID 28623893, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor HES-4-A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001323826.1 → NP_001310755.1  transcription factor HES-4-A-like

    Status: PROVISIONAL

    Source sequence(s)
    AB125743
    UniProtKB/TrEMBL
    A0A2L2YDG9, Q75UQ7
    Related
    NP_001310755.1, NM_001323826.1
    Conserved Domains (2) summary
    cd00083
    Location:11 → 74
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:85 → 123
    Hairy_orange; Hairy Orange

RefSeqs of Annotated Genomes: Parasteatoda tepidariorum Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ptep_3.0

Genomic

  1. NW_024970103.1 Reference Ptep_3.0

    Range
    528261..530087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases