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LOC107440397 irregular chiasm C-roughest protein [ Parasteatoda tepidariorum (common house spider) ]

Gene ID: 107440397, updated on 7-Dec-2023

Summary

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Gene symbol
LOC107440397
Gene description
irregular chiasm C-roughest protein
See related
EnsemblRapid:LOC107440397
Gene type
protein coding
RefSeq status
MODEL
Organism
Parasteatoda tepidariorum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Araneoidea; Theridiidae; Parasteatoda
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Genomic context

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See LOC107440397 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Ptep_3.0 (GCF_000365465.3) Unplaced Scaffold NW_024970072.1 (35344..473100, complement)
100 previous assembly Ptep_1.0 (GCF_000365465.1) Unplaced Scaffold NW_015458887.1 (2131..446137)

NW_024970072.1Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes protein 6 Neighboring gene nephrin Neighboring gene mitochondrial enolase superfamily member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of the impact of RNA preservation methods of spiders for de novo transcriptome assembly. Kono N, et al. Mol Ecol Resour, 2016 May. PMID 26561354
  2. Evolutionary origin of type IV classical cadherins in arthropods. Sasaki M, et al. BMC Evol Biol, 2017 Jun 17. PMID 28623893, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parasteatoda tepidariorum Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ptep_3.0

Genomic

  1. NW_024970072.1 Reference Ptep_3.0

    Range
    35344..473100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043046457.1 → XP_042902391.1  irregular chiasm C-roughest protein isoform X2

    Related
    XP_042902391.1, XM_043046457.1
    Conserved Domains (4) summary
    smart00410
    Location:80 → 175
    IG_like; Immunoglobulin like
    pfam13927
    Location:281 → 351
    Ig_3; Immunoglobulin domain
    cd00096
    Location:452 → 456
    Ig; Ig strand A [structural motif]
    cl11960
    Location:451 → 547
    Ig; Immunoglobulin domain

  2. XM_016053326.2 → XP_015908812.1  irregular chiasm C-roughest protein isoform X2

    Related
    XP_015908812.1, XM_016053326.2
    Conserved Domains (4) summary
    smart00410
    Location:80 → 175
    IG_like; Immunoglobulin like
    pfam13927
    Location:281 → 351
    Ig_3; Immunoglobulin domain
    cd00096
    Location:452 → 456
    Ig; Ig strand A [structural motif]
    cl11960
    Location:451 → 547
    Ig; Immunoglobulin domain

  3. XM_043046456.1 → XP_042902390.1  irregular chiasm C-roughest protein isoform X2

    Related
    XP_042902390.1, XM_043046456.1
    Conserved Domains (4) summary
    smart00410
    Location:80 → 175
    IG_like; Immunoglobulin like
    pfam13927
    Location:281 → 351
    Ig_3; Immunoglobulin domain
    cd00096
    Location:452 → 456
    Ig; Ig strand A [structural motif]
    cl11960
    Location:451 → 547
    Ig; Immunoglobulin domain

  4. XM_016053333.2 → XP_015908819.1  irregular chiasm C-roughest protein isoform X2

    Related
    XP_015908819.1, XM_016053333.2
    Conserved Domains (4) summary
    smart00410
    Location:80 → 175
    IG_like; Immunoglobulin like
    pfam13927
    Location:281 → 351
    Ig_3; Immunoglobulin domain
    cd00096
    Location:452 → 456
    Ig; Ig strand A [structural motif]
    cl11960
    Location:451 → 547
    Ig; Immunoglobulin domain

  5. XM_016053307.2 → XP_015908793.1  irregular chiasm C-roughest protein isoform X1

    Related
    XP_015908793.1, XM_016053307.2
    Conserved Domains (5) summary
    smart00408
    Location:399 → 452
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:476 → 565
    IG_like; Immunoglobulin like
    pfam07679
    Location:386 → 467
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:299 → 369
    Ig_3; Immunoglobulin domain
    cl11960
    Location:469 → 565
    Ig; Immunoglobulin domain

  6. XM_043046459.1 → XP_042902393.1  irregular chiasm C-roughest protein isoform X3

    Related
    XP_042902393.1, XM_043046459.1
    Conserved Domains (4) summary
    smart00408
    Location:399 → 452
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:98 → 193
    IG; Immunoglobulin
    cd00096
    Location:487 → 491
    Ig; Ig strand B [structural motif]
    cl11960
    Location:469 → 565
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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Other Literature Sources
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