U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107434932 glucan endo-1,3-beta-glucosidase 11-like [ Ziziphus jujuba (common jujube) ]

Gene ID: 107434932, updated on 31-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107434932
Gene description
glucan endo-1,3-beta-glucosidase 11-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ziziphus jujuba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Also known as
Glu-1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107434932 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current ASM3175591v1 (GCF_031755915.1) 1 NC_083379.1 (33143036..33148262, complement)
101 previous assembly ZizJuj_1.1 (GCF_000826755.1) Unplaced Scaffold NW_015453490.1 (167623..172924)

Chromosome 1 - NC_083379.1Genomic Context describing neighboring genes Neighboring gene blue copper protein Neighboring gene tyrosine decarboxylase Neighboring gene thylakoid lumenal 16.5 kDa protein, chloroplastic Neighboring gene methyl-CpG-binding domain-containing protein 11

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glucan endo-1,3-beta-glucosidase 11-like
Names
beta-1,3-glucanase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001323888.1 → NP_001310817.1  glucan endo-1,3-beta-glucosidase 11-like precursor

    Status: PROVISIONAL

    Source sequence(s)
    DQ012940
    UniProtKB/TrEMBL
    Q4ZGK1
    Conserved Domains (1) summary
    cl23725
    Location:34 → 352
    Glyco_hydro_1; Glycosyl hydrolase family 1

RefSeqs of Annotated Genomes: GCF_031755915.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3175591v1 Primary Assembly

Genomic

  1. NC_083379.1 Reference ASM3175591v1 Primary Assembly

    Range
    33143036..33148262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016046452.4 → XP_015901938.3  glucan endo-1,3-beta-glucosidase 11-like isoform X1

    UniProtKB/TrEMBL
    A0A6P4ASN1

  2. XM_025067713.3 → XP_024923481.1  glucan endo-1,3-beta-glucosidase 11-like isoform X2

    UniProtKB/TrEMBL
    A0A6P6FPP1
    Conserved Domains (1) summary
    cl23725
    Location:34 → 352
    Glyco_hydro_1; Glycosyl hydrolase family 1

  3. XM_016046453.4 → XP_015901939.1  glucan endo-1,3-beta-glucosidase 11-like isoform X3

    UniProtKB/TrEMBL
    A0A6P4B055
    Conserved Domains (1) summary
    cl23725
    Location:34 → 352
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases