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trps1 trichorhinophalangeal syndrome I [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107394664, updated on 14-Mar-2024

Summary

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Gene symbol
trps1
Gene description
trichorhinophalangeal syndrome I
See related
Ensembl:ENSNFUG00015012675
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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See trps1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539922.1 (12367198..12767004)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr19 NC_029667.1 (12598305..12762666)

NW_026539922.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene CLPTM1 like Neighboring gene uncharacterized LOC129164591 Neighboring gene CUB and Sushi multiple domains 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1
Names
transcriptional repressor GATA binding 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539922.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    12367198..12767004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054745161.1 → XP_054601136.1  zinc finger transcription factor Trps1

  2. XM_054745160.1 → XP_054601135.1  zinc finger transcription factor Trps1

  3. XM_054745159.1 → XP_054601134.1  zinc finger transcription factor Trps1

  4. XM_054745162.1 → XP_054601137.1  zinc finger transcription factor Trps1

  5. XM_015973708.2 → XP_015829194.2  zinc finger transcription factor Trps1

  6. XM_015973706.2 → XP_015829192.2  zinc finger transcription factor Trps1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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