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ccdc50a coiled-coil domain containing 50a [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107392672, updated on 6-Jun-2024

Summary

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Gene symbol
ccdc50a
Gene description
coiled-coil domain containing 50a
See related
Ensembl:ENSNFUG00015025420
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
ccdc50
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539929.1 (19975299..19993387)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr17 NC_029665.1 (22259480..22275870)

NW_026539929.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 15 Neighboring gene urotensin 2 domain containing Neighboring gene claudin-19 Neighboring gene prolyl 3-hydroxylase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 50
Names
coiled-coil domain containing 50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539929.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    19975299..19993387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015970573.2 → XP_015826059.2  coiled-coil domain-containing protein 50

    UniProtKB/TrEMBL
    A0A8C6Q8V8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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