U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107392671 claudin-19 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107392671, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107392671
Gene description
claudin-19
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539929.1 (20005436..20007836)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr17 NC_029665.1 (22284283..22286680)

NW_026539929.1Genomic Context describing neighboring genes Neighboring gene urotensin 2 domain containing Neighboring gene coiled-coil domain containing 50a Neighboring gene prolyl 3-hydroxylase 2 Neighboring gene coiled-coil domain containing 181

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
claudin-19
Names
Nfu_g_1_002610

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539929.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    20005436..20007836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054752335.1 → XP_054608310.1  claudin-19 isoform X2

    UniProtKB/TrEMBL
    A0A1A8A939

  2. XM_015970572.2 → XP_015826058.1  claudin-19 isoform X1

    UniProtKB/TrEMBL
    A0A1A8A939, A0A9D2XII0
    Conserved Domains (1) summary
    cl21598
    Location:5 → 156
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases