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mgat4c mgat4 family member C [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107388342, updated on 10-Oct-2024

Summary

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Gene symbol
mgat4c
Gene description
mgat4 family member C
See related
Ensembl:ENSNFUG00015006136
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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See mgat4c in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539937.1 (4194231..4475971)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr13 NC_029661.1 (4807275..5083757)

NW_026539937.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129153506 Neighboring gene uncharacterized LOC129153507 Neighboring gene uncharacterized LOC129153509 Neighboring gene uncharacterized LOC129153508 Neighboring gene spectrin alpha chain, non-erythrocytic 1-like Neighboring gene Ras association domain family member 9 Neighboring gene neurotensin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
Names
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539937.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    4194231..4475971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054732737.1 → XP_054588712.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A0A8C6L1L3

  2. XM_015963812.2 → XP_015819298.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2

    UniProtKB/TrEMBL
    A0A1A8A695, A0A9D3B7C4
    Related
    ENSNFUP00015012496.1
    Conserved Domains (1) summary
    pfam04666
    Location:63 → 324
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  3. XM_015963814.2 → XP_015819300.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2

    UniProtKB/TrEMBL
    A0A1A8A695, A0A9D3B7C4
    Conserved Domains (1) summary
    pfam04666
    Location:63 → 324
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  4. XM_054732739.1 → XP_054588714.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2

    UniProtKB/TrEMBL
    A0A9D3B7C4

  5. XM_054732738.1 → XP_054588713.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2

    UniProtKB/TrEMBL
    A0A9D3B7C4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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