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LOC107388138 heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107388138, updated on 16-Nov-2023

Summary

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Gene symbol
LOC107388138
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 3B1
See related
Ensembl:ENSNFUG00015013850
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
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Genomic context

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See LOC107388138 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539926.1 (8217748..8251338)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr12 NC_029660.1 (36028415..36061979, complement)

NW_026539926.1Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene methionine sulfoxide reductase B1b Neighboring gene meiosis specific with OB-fold Neighboring gene MTOR associated protein, LST8 homolog (S. cerevisiae) Neighboring gene BRICHOS domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 3B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539926.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    8217748..8251338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015963540.2 → XP_015819026.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1

    UniProtKB/TrEMBL
    A0A1A8AZC8
    Related
    ENSNFUP00015028618.1
    Conserved Domains (1) summary
    pfam00685
    Location:107 → 343
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
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Gene LinkOut

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