U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

kirrel1a kirre like nephrin family adhesion molecule 1a [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107384775, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
Ensembl:ENSNFUG00015023029
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
kirrel; KIRRELA; kirrel1
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See kirrel1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539915.1 (41037696..41098583)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr10 NC_029658.1 (11210833..11272123, complement)

NW_026539915.1Genomic Context describing neighboring genes Neighboring gene interleukin 13 receptor, alpha 1 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
kin of IRRE-like protein 1a
Names
kin of IRRE like
kin of IRRE like a
kirre like nephrin family adhesion molecule 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539915.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    41037696..41098583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015958226.2 → XP_015813712.1  kin of IRRE-like protein 1a isoform X1

    UniProtKB/TrEMBL
    A0A1A8V5U7, A0A8C6PXU3
    Related
    ENSNFUP00015049676.1
    Conserved Domains (4) summary
    pfam13927
    Location:307 → 372
    Ig_3; Immunoglobulin domain
    cd00096
    Location:122 → 125
    Ig; Ig strand A [structural motif]
    cd05898
    Location:390 → 493
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:121 → 218
    Ig; Immunoglobulin domain

  2. XM_015958227.2 → XP_015813713.1  kin of IRRE-like protein 1a isoform X2

    UniProtKB/TrEMBL
    A0A1A7ZEC3, A0A8C6PXU3
    Related
    ENSNFUP00015049595.1
    Conserved Domains (4) summary
    pfam13927
    Location:307 → 372
    Ig_3; Immunoglobulin domain
    cd00096
    Location:122 → 125
    Ig; Ig strand A [structural motif]
    cd05898
    Location:390 → 493
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:121 → 218
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.