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chst11 carbohydrate (chondroitin 4) sulfotransferase 11 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107381715, updated on 14-Mar-2024

Summary

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Gene symbol
chst11
Gene description
carbohydrate (chondroitin 4) sulfotransferase 11
See related
Ensembl:ENSNFUG00015017674
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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See chst11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539916.1 (61325902..61384959)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr01 NC_029649.1 (61695068..61827974)

NW_026539916.1Genomic Context describing neighboring genes Neighboring gene muskelin 1, intracellular mediator containing kelch motifs Neighboring gene uncharacterized LOC129162952 Neighboring gene solute carrier family 41 member 2b Neighboring gene NOP protein chaperone 1 Neighboring gene aldehyde dehydrogenase 1 family, member L2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539916.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    61325902..61384959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054739466.1 → XP_054595441.1  carbohydrate sulfotransferase 11 isoform X2

  2. XM_054739465.1 → XP_054595440.1  carbohydrate sulfotransferase 11 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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