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si:dkey-199f5.8 beta-1,4-galactosyltransferase 3 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107379065, updated on 10-Oct-2024

Summary

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Gene symbol
si:dkey-199f5.8
Gene description
beta-1,4-galactosyltransferase 3
See related
Ensembl:ENSNFUG00015004150
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
zebrafish all
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Genomic context

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See si:dkey-199f5.8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539917.1 (40182407..40206913, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr05 NC_029653.1 (46293119..46310177, complement)

NW_026539917.1Genomic Context describing neighboring genes Neighboring gene hemojuvelin BMP co-receptor Neighboring gene CD82 antigen Neighboring gene uncharacterized LOC129163409 Neighboring gene tubulin alpha chain-like Neighboring gene proteasome 26S subunit, ATPase 4 Neighboring gene uncharacterized LOC107378900 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 3; zinc finger and SCAN domain-containing protein 21; zinc finger protein 570

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539917.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    40182407..40206913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015949650.2 → XP_015805136.1  zinc finger protein 570 isoform X1

    UniProtKB/TrEMBL
    A0A1A8U2X5

  2. XM_054740822.1 → XP_054596797.1  zinc finger and SCAN domain-containing protein 21 isoform X2

  3. XM_054740821.1 → XP_054596796.1  zinc finger and SCAN domain-containing protein 21 isoform X2

  4. XM_054740820.1 → XP_054596795.1  zinc finger and SCAN domain-containing protein 21 isoform X2

  5. XM_015949651.2 → XP_015805137.2  beta-1,4-galactosyltransferase 3 isoform X3

  6. XM_054740823.1 → XP_054596798.1  beta-1,4-galactosyltransferase 3 isoform X4

Nucleotide Protein
Heading Accession and Version

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