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LOC107378920 plectin [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107378920, updated on 16-Nov-2023

Summary

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Gene symbol
LOC107378920
Gene description
plectin
See related
Ensembl:ENSNFUG00015003280
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
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Genomic context

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See LOC107378920 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
45
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539917.1 (33665222..33817532)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr05 NC_029653.1 (38348638..38480699)

NW_026539917.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene hepcidin Neighboring gene uncharacterized LOC129163368 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52, riboflavin transporter, member 3-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539917.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    33665222..33817532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054740599.1 → XP_054596574.1  plectin isoform X13

  2. XM_054740600.1 → XP_054596575.1  plectin isoform X14

  3. XM_054740601.1 → XP_054596576.1  plectin isoform X15

  4. XM_054740602.1 → XP_054596577.1  plectin isoform X16

  5. XM_054740603.1 → XP_054596578.1  plectin isoform X17

  6. XM_054740604.1 → XP_054596579.1  plectin isoform X18

  7. XM_054740606.1 → XP_054596581.1  plectin isoform X20

  8. XM_054740626.1 → XP_054596601.1  plectin isoform X41

  9. XM_054740608.1 → XP_054596583.1  plectin isoform X22

  10. XM_054740614.1 → XP_054596589.1  plectin isoform X28

  11. XM_054740609.1 → XP_054596584.1  plectin isoform X23

  12. XM_054740616.1 → XP_054596591.1  plectin isoform X30

  13. XM_054740611.1 → XP_054596586.1  plectin isoform X25

  14. XM_054740615.1 → XP_054596590.1  plectin isoform X29

  15. XM_054740617.1 → XP_054596592.1  plectin isoform X32

  16. XM_054740622.1 → XP_054596597.1  plectin isoform X37

  17. XM_054740620.1 → XP_054596595.1  plectin isoform X35

  18. XM_054740624.1 → XP_054596599.1  plectin isoform X39

  19. XM_054740618.1 → XP_054596593.1  plectin isoform X33

  20. XM_054740591.1 → XP_054596566.1  plectin isoform X1

  21. XM_054740592.1 → XP_054596567.1  plectin isoform X2

  22. XM_015949397.2 → XP_015804883.2  plectin isoform X4

  23. XM_054740595.1 → XP_054596570.1  plectin isoform X6

  24. XM_054740596.1 → XP_054596571.1  plectin isoform X7

  25. XM_015949402.2 → XP_015804888.2  plectin isoform X10

  26. XM_054740593.1 → XP_054596568.1  plectin isoform X3

  27. XM_054740594.1 → XP_054596569.1  plectin isoform X5

  28. XM_054740597.1 → XP_054596572.1  plectin isoform X8

  29. XM_054740598.1 → XP_054596573.1  plectin isoform X9

  30. XM_015949403.2 → XP_015804889.2  plectin isoform X11

  31. XM_015949404.2 → XP_015804890.2  plectin isoform X12

  32. XM_054740619.1 → XP_054596594.1  plectin isoform X34

  33. XM_054740621.1 → XP_054596596.1  plectin isoform X36

  34. XM_054740623.1 → XP_054596598.1  plectin isoform X38

  35. XM_054740625.1 → XP_054596600.1  plectin isoform X40

  36. XM_054740605.1 → XP_054596580.1  plectin isoform X19

  37. XM_054740607.1 → XP_054596582.1  plectin isoform X21

  38. XM_054740612.1 → XP_054596587.1  plectin isoform X26

  39. XM_054740610.1 → XP_054596585.1  plectin isoform X24

  40. XM_054740613.1 → XP_054596588.1  plectin isoform X27

  41. XM_015949409.2 → XP_015804895.2  plectin isoform X31

Nucleotide Protein
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