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capn3b calpain 3b [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107377674, updated on 14-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
Ensembl:ENSNFUG00015016963
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539925.1 (49607814..49624562, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr04 NC_029652.1 (52341054..52357303, complement)

NW_026539925.1Genomic Context describing neighboring genes Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539925.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    49607814..49624562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054748037.1 → XP_054604012.1  calpain-3b isoform X9

  2. XM_015947442.2 → XP_015802928.2  calpain-3b isoform X8

  3. XM_054748034.1 → XP_054604009.1  calpain-3b isoform X6

  4. XM_054748033.1 → XP_054604008.1  calpain-3b isoform X5

  5. XM_054748032.1 → XP_054604007.1  calpain-3b isoform X4

  6. XM_054748031.1 → XP_054604006.1  calpain-3b isoform X3

  7. XM_054748030.1 → XP_054604005.1  calpain-3b isoform X2

  8. XM_015947443.2 → XP_015802929.2  calpain-3b isoform X1

  9. XM_054748035.1 → XP_054604010.1  calpain-3b isoform X7

  10. XM_054748036.1 → XP_054604011.1  calpain-3b isoform X7

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases