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LOC107376544 heparan sulfate glucosamine 3-O-sulfotransferase 6 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107376544, updated on 16-Nov-2023

Summary

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Gene symbol
LOC107376544
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6
See related
Ensembl:ENSNFUG00015018165
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
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Genomic context

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See LOC107376544 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539927.1 (52565514..52584690)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr03 NC_029651.1 (56974006..56993135)

NW_026539927.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein OZF Neighboring gene methionine-R-sulfoxide reductase B1-A-like Neighboring gene fumarylacetoacetate hydrolase domain containing 1 Neighboring gene hydroxyacylglutathione hydrolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539927.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    52565514..52584690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015945691.2 → XP_015801177.1  heparan sulfate glucosamine 3-O-sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C6P3L4
    Related
    ENSNFUP00015037590.1
    Conserved Domains (1) summary
    pfam00685
    Location:118 → 354
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
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Gene LinkOut

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