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LOC107340357 epsilon-sarcoglycan-like [ Acropora digitifera ]

Gene ID: 107340357, updated on 2-Nov-2023

Summary

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Gene symbol
LOC107340357
Gene description
epsilon-sarcoglycan-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acropora digitifera
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Acropora
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Genomic context

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See LOC107340357 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Adig_1.1 (GCF_000222465.1) Unplaced Scaffold NW_015441203.1 (612284..618517)

NW_015441203.1Genomic Context describing neighboring genes Neighboring gene U1 small nuclear ribonucleoprotein A-like Neighboring gene 60S ribosomal protein L12-like Neighboring gene N6-adenosine-methyltransferase subunit METTL14-like Neighboring gene uncharacterized LOC107340363

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015441203.1 Unplaced Scaffold Reference Adig_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epsilon-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acropora digitifera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Adig_1.1 Primary Assembly

Genomic

  1. NW_015441203.1 Reference Adig_1.1 Primary Assembly

    Range
    612284..618517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015905713.1 → XP_015761199.1  epsilon-sarcoglycan-like isoform X2

    Conserved Domains (1) summary
    pfam05510
    Location:18 → 232
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_015905712.1 → XP_015761198.1  epsilon-sarcoglycan-like isoform X1

    Conserved Domains (1) summary
    pfam05510
    Location:18 → 232
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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