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SGCA sarcoglycan alpha [ Coturnix japonica (Japanese quail) ]

Gene ID: 107325064, updated on 14-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
Ensembl:ENSCJPG00005019320
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 27
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 27 NC_029542.1 (2571985..2575247, complement)

Chromosome 27 - NC_029542.1Genomic Context describing neighboring genes Neighboring gene all-trans-retinol 13,14-reductase-like Neighboring gene uncharacterized LOC107325219 Neighboring gene collagen type I alpha 1 chain Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029542.1 Chromosome 27 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029542.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    2571985..2575247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015885558.2 → XP_015741044.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8C2UBH6
    Related
    ENSCJPP00005024526.1, ENSCJPT00005033410.1
    Conserved Domains (1) summary
    pfam05510
    Location:41 → 362
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_032440926.1 → XP_032296817.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8C2UBH6
    Conserved Domains (1) summary
    pfam05510
    Location:41 → 362
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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