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SUMF1 sulfatase modifying factor 1 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107319933, updated on 14-Mar-2024

Summary

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Gene symbol
SUMF1
Gene description
sulfatase modifying factor 1
See related
Ensembl:ENSCJPG00005018685
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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See SUMF1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 12 NC_029527.1 (15729804..15757429, complement)

Chromosome 12 - NC_029527.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107319992 Neighboring gene histone-lysine N-methyltransferase SETMAR Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene basic helix-loop-helix family member e40

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029527.1 Chromosome 12 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
formylglycine-generating enzyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029527.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    15729804..15757429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015875321.2 → XP_015730807.1  formylglycine-generating enzyme isoform X4

    Conserved Domains (2) summary
    COG1262
    Location:1 → 298
    YfmG; Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones]
    pfam03781
    Location:1 → 296
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

  2. XM_015875318.2 → XP_015730804.1  formylglycine-generating enzyme isoform X1

    Conserved Domains (2) summary
    COG1262
    Location:63 → 360
    YfmG; Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones]
    pfam03781
    Location:63 → 358
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

  3. XM_015875319.2 → XP_015730805.1  formylglycine-generating enzyme isoform X2

    UniProtKB/TrEMBL
    A0A8C2U7N0
    Related
    ENSCJPP00005023581.1, ENSCJPT00005032306.1
    Conserved Domains (2) summary
    COG1262
    Location:63 → 341
    YfmG; Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones]
    pfam03781
    Location:63 → 339
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

  4. XM_015875320.2 → XP_015730806.1  formylglycine-generating enzyme isoform X3

    Conserved Domains (2) summary
    COG1262
    Location:63 → 305
    YfmG; Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones]
    pfam03781
    Location:63 → 318
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

RNA

  1. XR_001558006.2 RNA Sequence

  2. XR_001558005.2 RNA Sequence

  3. XR_001558009.2 RNA Sequence

  4. XR_001558008.2 RNA Sequence

  5. XR_001558007.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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