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P3H2 prolyl 3-hydroxylase 2 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107318275, updated on 14-Mar-2024

Summary

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Gene symbol
P3H2
Gene description
prolyl 3-hydroxylase 2
See related
Ensembl:ENSCJPG00005013583
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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See P3H2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 9 NC_029524.1 (12104225..12156263)

Chromosome 9 - NC_029524.1Genomic Context describing neighboring genes Neighboring gene claudin 16 Neighboring gene claudin 1 Neighboring gene tumor protein p63 Neighboring gene uncharacterized LOC107318127

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029524.1 Chromosome 9 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029524.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    12104225..12156263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032446574.1 → XP_032302465.1  prolyl 3-hydroxylase 2 isoform X3

    Conserved Domains (1) summary
    smart00702
    Location:311 → 509
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_015871910.2 → XP_015727396.1  prolyl 3-hydroxylase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2TS29
    Related
    ENSCJPP00005016550.1, ENSCJPT00005023236.1
    Conserved Domains (1) summary
    cl21496
    Location:458 → 545
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_015871909.2 → XP_015727395.1  prolyl 3-hydroxylase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2TPF9, A0A8C2TSS0
    Related
    ENSCJPP00005016552.1, ENSCJPT00005023238.1
    Conserved Domains (1) summary
    smart00702
    Location:458 → 656
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

RNA

  1. XR_001557252.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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